Gene Set Plot

Graph Settings

Point Color

Least Significant:

Most Significant:

Selected:

Point Size

Fixed:

Dynamic:

Size:

Scalar:

Display Genes This option filters the selected point(s) to show only significant genes.
Only available when you use thresholded input.

Show significant genes only

Choose Algorithm:

UMAP Settings

Number of Neighbors:

Minimum Distance:

Random State (seed):

Set to 0 or leave empty for random initialization.

t-SNE Settings

Perplexity:

Balance between local and global structure (5-50 typically).

Early Exaggeration:

Controls space between clusters during optimization.

Max Iterations:

Maximum optimization steps.

Isomap Settings

Number of Neighbors:

Number of neighbors to consider for graph construction.

Additional Settings

Distance Metric:

Weighted:

Plain:

Select Threshold Type

Use FDR Use P-Value

FDR

P-Value

Welcome to Gene Set Plot

A Gene Set Enrichment Analysis (GSEA) visualization tool.

Manual Gene Input

Select Gene Set Collection(s):

Graph Settings

Point Color

Point Size

Display Genes This option filters the selected point(s) to show only significant genes.
Only available when you use thresholded input.

Choose Algorithm:

UMAP Settings

t-SNE Settings

Isomap Settings

Additional Settings

Selected Points:

Welcome to Gene Set Plot

A Gene Set Enrichment Analysis (GSEA) visualization tool.

Manual Gene Input

Select Gene Set Collection(s):

Graph Settings

Point Color

Point Size

Display Genes i This option filters the selected point(s) to show only significant genes. Only available when you use thresholded input.

Choose Algorithm:

UMAP Settings

t-SNE Settings

Isomap Settings

Additional Settings

Selected Points:

Display Genes This option filters the selected point(s) to show only significant genes.
Only available when you use thresholded input.